EGAF00005318141 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318141
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4027912
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	61

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	21049	0.5225784475926981	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	15697	0.3897056340853524	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	11863	0.2945198405526238	No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTT	6880	0.17080810107072847	No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC	5830	0.14474000425034111	No Hit
GGGCGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGC	4706	0.11683472727308838	No Hit
CGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	4648	0.11539477525824794	No Hit
GGGGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCCCACCCCTCCTCCCCGCGCCCCCGCCCCGGCG	4631	0.11497272035734644	No Hit
GGGGGGAAGGCCCGGCGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGT	4158	0.10322966340873385	No Hit
GGGGACATTTGCTTCTGACACAACTGTGTTCACTAGCAACCTCAAACAGA	4145	0.10290691554333858	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CCGAACT	1110	52.94536	67
GCGCGGT	7750	52.310356	9
GGGGACT	5260	49.460632	1
TGGCGCG	8485	48.18313	15
CGGTTCA	1240	47.980915	5
CGCGGTG	8570	47.587704	10
ACTCTTC	5885	47.257565	5
TCTGGTC	5615	47.12739	10
GCCGGTT	1255	46.853275	3
GGACTCT	6100	46.83656	3
CGAACTT	1290	46.550407	68
GGGACTC	6095	45.526012	2
GTTGATC	1470	45.179943	10
TTCTGGT	6000	44.679897	9
CGGGACT	1280	44.410347	1
CTGGTCC	6000	44.045734	11
AGTACGC	1385	43.707897	64
GTAGTCC	9420	43.428135	27
TAGTCCC	9480	43.198414	28
TGTAGTC	9560	42.889645	26