EGAF00005318145 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318145
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3704385
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	56

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	11519	0.31095579968064874	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	10820	0.29208627073049914	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	7051	0.19034198659156648	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	5228	0.14113003912930216	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCGCGGT	3675	49.857113	9
CCGAACT	725	46.882	67
TGGCGCG	4045	45.380844	15
CGCGGTG	4215	43.79475	10
GCCGGTT	790	43.001213	3
ACTCTTC	4000	42.120556	5
CTACTCG	4460	41.32938	37
TACTCGG	4530	40.794746	38
TCTGGTC	4060	40.64961	10
CGGTTCA	840	40.033115	5
ACTCGGG	4740	39.883743	39
GGGGACT	4445	39.364346	1
GGACTCT	4395	38.725357	3
GTAGTCC	4800	38.583214	27
TAGTCCC	4825	38.337906	28
CGGGTAG	545	37.99457	1
AGGATCG	4655	37.90374	59
TGTAGTC	4885	37.89587	26
CGTGCCT	4865	37.799408	20
TTCTGGT	4360	37.774433	9