EGAF00005318146 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318146
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3705565
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	23479	0.6336145769943315	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	12312	0.33225702423247194	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	10945	0.2953665635334962	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	9874	0.26646408847233827	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	6401	0.17274018941780808	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	6227	0.1680445492117936	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	5187	0.1399786537275692	No Hit
GTGGCTTAGGAGCTTGAAGTTGACCGGGTCCACCCGAAGCTTGTGCGCGT	4647	0.125405977226145	No Hit
GTGCGCGTGCAGGTCGCTCAGGGCGGACAGCGCGTTGGGCATGTCGTCCA	4443	0.11990074388116252	No Hit
GGGGGTACGGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGG	4199	0.11331605301755601	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACATTGCCCAGGAGCCTGAAGTTCTC	3861	0.1041946369851831	No Hit
GGGGGCAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	3812	0.10287230152486868	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	3743	0.10101023730524224	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	6855	36.103046	32
GCGGCAC	6985	35.45241	33
CGGCACC	7110	34.799416	34
CCCGTCG	6995	34.084908	44
CCGTCGC	6990	33.77923	45
TCGCCGG	6995	33.64058	48
GCACCCC	7525	33.120556	36
CCCCCGA	7780	32.07198	19
CCCCCGT	7445	31.788157	42
ACCCGCG	7955	31.361183	25
GGCACCC	7970	31.334812	35
CACCCCC	8015	31.16803	37
CCCCGAC	8155	30.734438	20
AGTCCGC	8520	29.57744	7
TCGCCGT	385	29.536905	1
CAGTCCG	8275	29.125488	6
CCCGACC	8670	29.07728	21
CCGCGCG	8630	29.020828	27
TCCGCCC	8975	28.460505	9
AGGACCG	700	28.388725	70