EGAF00005318148 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318148
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3699128
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	23602	0.6380422629333183	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	12293	0.3323215633522279	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	10981	0.2968537449907113	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	9706	0.26238616236042656	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	6466	0.17479795238229118	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	6292	0.1700941411056876	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	5256	0.1420875406311974	No Hit
GTGGCTTAGGAGCTTGAAGTTGACCGGGTCCACCCGAAGCTTGTGCGCGT	4761	0.1287060085512045	No Hit
GTGCGCGTGCAGGTCGCTCAGGGCGGACAGCGCGTTGGGCATGTCGTCCA	4610	0.12462396543185314	No Hit
GGGGGTACGGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGG	4049	0.10945822907452783	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	3817	0.10318648070572307	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACATTGCCCAGGAGCCTGAAGTTCTC	3756	0.10153744341909769	No Hit
GGGGGCAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	3737	0.10102380885441109	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	6540	37.76953	32
GCGGCAC	6610	37.338135	33
CGGCACC	6845	36.02539	34
TCGCCGG	6670	35.17915	48
CGTACGT	225	35.114365	19
CCGTCGC	6725	34.906246	45
CCCGTCG	6785	34.871826	44
GCACCCC	7400	33.563515	36
CCCCCGA	7480	32.74368	19
GGCACCC	7655	32.422356	35
ACCCGCG	7625	32.293507	25
CCCCCGT	7320	32.081127	42
CACCCCC	7795	31.837425	37
CCCCGAC	7830	31.424017	20
CCGCGCG	8185	30.159777	27
CCCGACC	8450	29.174862	21
AGTCCGC	8510	29.103577	7
CAGTCCG	8260	28.738548	6
CCCCGTC	8260	28.57725	43
TCCGCCC	8880	28.27723	9