EGAF00005318149 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318149
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3699128
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	56

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	10867	0.29377193760259174	No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	10666	0.28833822457617037	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	6778	0.18323237260240793	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	4944	0.13365312041108066	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCGCGGT	3840	47.52939	9
TGGCGCG	4020	45.39505	15
CGCGGTG	4290	43.0236	10
CTACTCG	4465	41.196262	37
TACTCGG	4450	41.133877	38
CCGAACT	605	39.65615	67
GTAGTCC	4660	39.58203	27
CGGCATA	330	38.781315	1
ACTCGGG	4830	38.639595	39
TAGTCCC	4765	38.591393	28
TGTAGTC	4875	37.880245	26
TCTGGTC	3470	37.866142	10
GGGGACT	4290	37.73317	1
AGGATCG	4730	37.004753	59
CGTGCCT	4890	36.892605	20
ACTCTTC	3675	36.500698	5
GATCGCT	4855	36.274204	61
GGACTCT	3975	36.2444	3
CGCGTGC	5035	36.139496	18
GCGTGCC	5105	35.594566	19