FastQCFastQC Report
Wed 8 May 2024
EGAF00005318161

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005318161
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3864483
Total Bases288.4 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC61

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT132600.34312481126194627No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTG118210.3058882650020714No Hit
GGGGGGCCCTTCCCGTGGATCGCCCCAGCTGCGGCGGGCGTCGCGGCCGC65620.1698027912142452No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC62570.16191040302156848No Hit
GGGGACTCTTCTGGTCCGCACAGACTCAGAGAGAACCCACCATGGTGCTG60660.1569679566451709No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN55340.14320156150253474No Hit
GGGGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCCCACCCC50720.1312465341418244No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)