FastQCFastQC Report
Thu 9 May 2024
EGAF00005318165

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005318165
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3924258
Total Bases293 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC61

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT129970.3311963688422117No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTG119570.3046945435289933No Hit
GGGGGGCCCTTCCCGTGGATCGCCCCAGCTGCGGCGGGCGTCGCGGCCGC64760.1650248276234641No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC62470.15918932954968812No Hit
GGGGACTCTTCTGGTCCGCACAGACTCAGAGAGAACCCACCATGGTGCTG60460.15406734215742188No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN55440.14127511493892603No Hit
GGGGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCCCACCCC51660.13164272073854472No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)