EGAF00005318165 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318165
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3924258
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	61

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	11336	0.2888698959140811	No Hit
GGGGGGCCCTTCCCGTGGATCGCCCCAGCTGCGGCGGGCGTCGCGGCCGC	6455	0.1644896946123318	No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC	6237	0.15893450430629177	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	6228	0.15870516158723508	No Hit
GGGGACTCTTCTGGTCCGCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	5747	0.14644806737987157	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	5544	0.14127511493892603	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	5282	0.13459869356194215	No Hit
GGGGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCCCACCCCTCCTCCCCGCGCCCCCGCCCCGGCG	4597	0.11714316438929348	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCGCGGT	3370	47.585876	9
GGGGACT	4350	46.21184	1
CCGAACT	610	45.562397	67
ACTCTTC	4185	45.130424	5
GTCGTAC	160	45.070873	3
TCTGGTC	4110	45.03374	10
TGGCGCG	3590	44.861057	15
GGACTCT	4630	43.536526	3
TACGGCC	530	42.763206	7
TTCTGGT	4465	41.91468	9
TGGTCCG	1510	41.84335	12
GGGACTC	4765	41.654465	2
CTGGTCC	4490	41.222424	11
CGGTAAG	290	40.425453	1
CTACTCG	4145	39.94199	37
CGCGGTG	4030	39.877865	10
GTCTACG	570	39.76177	4
CGGGACT	1025	39.35827	1
TACTCGG	4220	39.254856	38
CTACGGC	580	39.07672	6