EGAF00005318166 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318166
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3352120
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	16794	0.5009963843776476	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	13488	0.40237223011109385	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	6105	0.1821235516628283	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	4555	0.13588415689175806	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	4318	0.12881400427192344	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	4990	0.0	38.001877	32
GCGGCAC	5215	0.0	36.457195	33
CGGCACC	5360	0.0	35.624195	34
TCGCCGG	5145	0.0	35.092903	48
CCGTCGC	5195	0.0	34.691643	45
CCCGTCG	5405	0.0	33.62625	44
CCCCCGA	5830	0.0	32.25383	19
GCACCCC	6045	0.0	31.857279	36
ACCCGCG	6060	0.0	31.246265	25
CACCCCC	6265	0.0	30.824718	37
GGCACCC	6280	0.0	30.703554	35
CCCCCGT	5950	0.0	30.194025	42
CCCCGAC	6285	0.0	29.994463	20
CGTACGT	235	0.0	29.150072	19
TCGTATG	195	0.0	28.514132	40
CCGCGCG	6770	0.0	28.30541	27
AGTCCGC	6860	0.0	27.815786	7
CAGTCCG	6605	0.0	27.595335	6
ACGATCG	50	0.008077886	27.357174	6
CGATCTA	270	0.0	27.232868	47