FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005318168

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005318168
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3379585
Sequences flagged as poor quality0
Sequence length35-76
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG169700.5021326582997617No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN139080.4115298180101995No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG61460.1818566480795719No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG44560.13185050827246542No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG42570.12596221133659902No Hit
GACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTG34820.1030304016617425No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)