FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005318170

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005318170
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3428388
Sequences flagged as poor quality0
Sequence length35-76
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG171550.5003809370467986No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN142630.41602642408035495No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG63210.1843723639214698No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG46540.1357489292343807No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG42110.1228274045994794No Hit
GACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTG35790.1043930850300491No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)