FastQCFastQC Report
Wed 8 May 2024
EGAF00005318171

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005318171
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3428388
Total Bases254.5 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT153230.4469447448771842No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN139910.40809266629097984No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTG66430.19376453306918587No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGA40790.11897719861345915No Hit
CGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT38480.11223933813792372No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)