FastQCFastQC Report
Thu 9 May 2024
EGAF00005318175

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005318175
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3611221
Total Bases270.9 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC60

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT170690.47266561642170335No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTG110690.30651682630334726No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC64140.17761305663652266No Hit
GGGGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCCCACCCC49790.13787580433321583No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGA49740.1377373470081172No Hit
GGGCGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGC42560.11785487512395393No Hit
CGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT38650.10702751230124105No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN37490.10381530235895284No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)