FastQCFastQC Report
Wed 8 May 2024
EGAF00005318179

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005318179
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3609815
Total Bases270.8 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC60

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT174230.4826563134121832No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTG107500.29779919469557303No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC63530.17599239850241633No Hit
GGGGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCCCACCCC51280.14205714143245568No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGA50440.13973015237622982No Hit
GGGCGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGC41660.11540757628853557No Hit
CGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT38400.10637664257032564No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN37200.10305237249000296No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)