EGAF00005318182 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318182
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3456499
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	57

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	24303	0.7031102858701825	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	10904	0.31546371053485045	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	6533	0.18900627484631125	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	6356	0.1838854864416278	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	5956	0.17231308326720188	No Hit
TGGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCAC	4819	0.1394185272438962	No Hit
AGGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCAC	4684	0.13551284117252746	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	4580	0.1325040163471767	No Hit
GGGGGCAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	4037	0.11679447903789354	No Hit
GCCCCGAGAGAACCTCCCCCGGGCCCGACGGCGCGACCCGCCCGGGGCGC	3810	0.11022714023640684	No Hit
GGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACGAG	3721	0.10765228053009708	No Hit
CGTTTGAATATTTGCTACTACCACCAAGATCTGCACCTGCGGCGGCTCCACCCGGGCCCGCGCCCTAGGCTTCA	3694	0.10687114331582331	No Hit
CTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAG	3483	0.10076670064131366	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	7170	38.29068	32
GCGGCAC	7355	37.249153	33
CGGCACC	7575	36.09061	34
TCGCCGG	7405	35.154034	48
GCACCCC	8005	34.345627	36
CCGTCGC	7540	34.309914	45
CCCGTCG	7620	34.06997	44
AGGACCG	730	33.241142	70
GGCACCC	8425	32.416805	35
CACCCCC	8470	32.35615	37
CCCCCGA	8655	32.056095	19
AGGAGGG	12300	30.39797	70
ACCCGCG	9270	29.649403	25
CCCCCGT	8860	29.106823	42
CCCCGAC	9720	28.338018	20
CTCGTTT	2185	27.901035	16
TCGTTTG	2225	27.715069	17
GGCGATC	1220	27.602715	70
CGCCCTA	1435	27.601141	61
GGCAGTC	1375	27.565428	4