EGAF00005318184 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318184
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3438361
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	57

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	24212	0.7041727148487318	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	10979	0.3193091126847937	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	6595	0.19180650315659117	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	6273	0.182441576088142	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	5978	0.17386190687946962	No Hit
TGGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCAC	4905	0.14265517785945106	No Hit
AGGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCAC	4553	0.13241774205791654	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	4537	0.1319524040669377	No Hit
GGGGGCAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	3911	0.11374605516989054	No Hit
GCCCCGAGAGAACCTCCCCCGGGCCCGACGGCGCGACCCGCCCGGGGCGC	3754	0.10917992613341065	No Hit
GGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACGAG	3656	0.10632973093866525	No Hit
CGTTTGAATATTTGCTACTACCACCAAGATCTGCACCTGCGGCGGCTCCACCCGGGCCCGCGCCCTAGGCTTCA	3644	0.1059807274454311	No Hit
CTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAG	3460	0.10062934054917444	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	7315	36.47395	32
TAGTCCG	445	36.348145	6
GCGGCAC	7625	35.00749	33
CGGCACC	7715	34.53061	34
GTGCCGT	545	33.75623	1
TCGCCGG	7550	33.470562	48
CCGTCGC	7540	33.32805	45
AGGACCG	855	32.99079	70
CCCGTCG	7760	32.540752	44
GCACCCC	8240	32.49384	36
GGCACCC	8690	30.832993	35
CACCCCC	8750	30.653051	37
CCCCCGA	8815	30.397009	19
AGGAGGG	12150	29.528791	70
CGCCCTA	1430	29.225935	61
TTATCGG	225	29.06133	7
TATCGGA	215	28.812334	8
ACCCGCG	9450	28.218723	25
GTTCTCG	2080	28.128244	13
CCCCCGT	9055	27.96152	42