EGAF00005318186 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318186
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3445812
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	57

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	24375	0.7073804374701812	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	11090	0.3218399610889973	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	6656	0.1931620181251908	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	6303	0.1829176983538278	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	5892	0.17099017590048443	No Hit
TGGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCAC	5105	0.14815085675016512	No Hit
AGGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCAC	4662	0.13529467074814297	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	4570	0.1326247630456914	No Hit
GGGGGCAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	4066	0.11799831215400028	No Hit
GCCCCGAGAGAACCTCCCCCGGGCCCGACGGCGCGACCCGCCCGGGGCGC	3956	0.1148060312054169	No Hit
CGTTTGAATATTTGCTACTACCACCAAGATCTGCACCTGCGGCGGCTCCACCCGGGCCCGCGCCCTAGGCTTCA	3770	0.10940817432872137	No Hit
GGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACGAG	3753	0.10891482181848575	No Hit
CTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAG	3570	0.10360402714947885	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATCGGA	220	0.0	37.55561	8
CGCGGCA	7330	0.0	37.527695	32
TTATCGG	235	0.0	36.62338	7
GCGGCAC	7505	0.0	36.435955	33
GTTCCGT	485	0.0	35.614944	1
TCGCCGG	7320	0.0	35.320778	48
CGGCACC	7830	0.0	35.02891	34
CCGTCGC	7635	0.0	34.201218	45
AGGACCG	880	0.0	33.841568	70
CCCGTCG	7795	0.0	33.70596	44
GCACCCC	8180	0.0	33.563496	36
GTTATCG	260	0.0	33.1019	6
GGCACCC	8585	0.0	31.845938	35
CACCCCC	8580	0.0	31.81771	37
TAGTCCG	435	0.0	31.656069	6
CCCCCGA	8815	0.0	31.0259	19
TATCGCG	45	0.0046727974	30.600866	10
AGGAGGG	12360	0.0	29.5557	70
GTCCGTT	275	0.0	28.793468	2
ACCCGCG	9560	0.0	28.728199	25