EGAF00005318187 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318187
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3445812
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	60

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	14279	0.41438708786201917	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	11843	0.3436925752188454	No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTT	7180	0.20836888373480617	No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC	7042	0.20436402218112887	No Hit
GGGGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCCCACCCCTCCTCCCCGCGCCCCCGCCCCGGCG	6148	0.17841948428991483	No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	5957	0.17287652373373824	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	5844	0.16959718057746623	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCGCGGT	6445	52.96045	9
CCGAACT	1045	52.39685	67
TGGCGCG	7000	48.908195	15
CGCGGTG	7015	48.804325	10
CGAACTT	1175	47.75707	68
GCCGGTT	1135	46.686794	3
CGGTTCA	1165	45.77925	5
CCGGTTC	1270	41.72342	4
GTAGTCC	8290	41.38607	27
TGTAGTC	8325	41.276943	26
CGTGCCT	8285	41.232124	20
CTACTCG	8395	41.137226	37
TAGTCCC	8355	41.036545	28
TACTCGG	8440	40.937683	38
CCTGTAG	8630	39.906666	24
GCCGAAC	1405	39.534634	66
CTTAGGC	1360	39.23071	18
ACTCGGG	9030	39.1356	39
CCTTAGG	1400	38.592594	17
GCGTGCC	9140	37.515408	19