EGAF00005318189 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318189
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3434809
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	60

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	14123	0.4111727901027393	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	11520	0.33538982808068807	No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTT	7060	0.20554272450083833	No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC	6885	0.20044782693884872	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	5973	0.17389613221579425	No Hit
GGGGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCCCACCCCTCCTCCCCGCGCCCCCGCCCCGGCG	5971	0.1738379048150858	No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	5904	0.17188728689135263	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCGCGGT	6500	53.336544	9
CCGAACT	1080	50.586	67
TGGCGCG	6925	50.15456	15
CGCGGTG	7075	49.29374	10
CGGTTCA	1130	47.834656	5
GCCGGTT	1190	45.414875	3
CGAACTT	1260	45.070995	68
CCGGTTC	1305	41.41219	4
GTAGTCC	8565	41.17394	27
TGTAGTC	8575	41.10667	26
CGTGCCT	8495	41.054142	20
TAGTCCC	8615	40.95175	28
TACTCGG	8545	40.774727	38
CTACTCG	8570	40.681316	37
CCTGTAG	8735	40.33188	24
CTTAGGC	1350	40.05691	18
ACTCGGG	9080	39.31033	39
CGGCAAA	675	39.066902	1
GGGGTAG	1545	38.852306	1
AGTCCCA	9250	38.119305	29