FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005318190

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005318190
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3334569
Sequences flagged as poor quality0
Sequence length35-76
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG162130.48620976204121136No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN115560.3465515333465884No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG63720.19108916324718428No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG48320.14490628324080262No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG40330.12094516562710202No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC38580.1156971110809223No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)