FastQCFastQC Report
Wed 8 May 2024
EGAF00005318192

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005318192
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3318853
Total Bases247.3 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG158530.47766502463351046No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN112070.3376769022309816No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG63620.19169273239881368No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG48860.1472195363880232No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGT44370.13369076605682745No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC40350.12157814763112437No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCAC33750.1016917591710148No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)