FastQCFastQC Report
Thu 9 May 2024
EGAF00005318193

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005318193
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3318853
Total Bases247.2 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC57

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT139620.4206875086061359No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN110420.33270530511595425No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTG63700.1919337795316635No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGA35710.10759741392583522No Hit
GGGGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCCCACCCC33380.10057691618158443No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)