EGAF00005318197 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318197
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3324371
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	57

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	11367	0.3419293454310605	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	6553	0.1971199965346828	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	5661	0.17028785295022728	No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	5358	0.1611733467774806	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCGCGGT	3610	47.96793	9
TGGCGCG	3855	44.467922	15
CCGAACT	650	43.585243	67
CGGCATA	245	42.32511	1
GCGGTAT	210	41.14941	1
CTACTCG	4350	39.97359	37
TACTCGG	4420	39.136654	38
GCCGGTT	695	38.971176	3
CGGTTCA	705	38.91058	5
GTCTACG	435	38.61904	4
CGCGGTG	4580	37.88308	10
GTAGTCC	4690	37.768784	27
TAGTCCC	4705	37.59795	28
ACTCGGG	4755	36.992092	39
CGGGTAG	490	36.681763	1
CGGCAAA	745	36.65336	1
TGTAGTC	4895	36.300858	26
CGTGCCT	4905	35.00587	20
CCTGTAG	5005	34.986923	24
AGGATCG	4825	34.922127	59