EGAF00005318198 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318198
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3315273
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	15466	0.46650758474490633	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	12903	0.3891987175716751	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	7480	0.22562244496908704	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	7150	0.215668513573392	No Hit
GTGGCTTAGGAGCTTGAAGTTGACCGGGTCCACCCGAAGCTTGTGCGCGT	6097	0.18390642339258337	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	5838	0.17609409541838636	No Hit
GTGCGCGTGCAGGTCGCTCAGGGCGGACAGCGCGTTGGGCATGTCGTCCA	5235	0.1579055480498891	No Hit
GGGGGTACGGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGG	5131	0.1547685514888216	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	4986	0.15039485436041014	No Hit
GCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCTT	4722	0.14243170924385412	No Hit
GGGGCTGGGGGGAGGCCCAAGGGGCAAGAAGCATGGCCACCGAGGCTCCA	4632	0.13971700068139184	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	4548	0.13718327268976038	No Hit
TGTCCAGGGAGGCGTGCACCGCAGGGGTGAACTCGGCGGGGAGGTGGGCG	4505	0.13588624526547285	No Hit
GCCGGTGCAAGGAGGGGAGGAGGGCCCGTTGGGAGGCCCAGCGGGCAGGAGGAACGGCTACCGAGGCTCCAGCTT	4105	0.12382087387675163	No Hit
GTCCAGGGAGGCGTGCACCGCAGGGGTGAACTCGGCGGGGAGGTGGGCGG	3732	0.11256991505676908	No Hit
GGGGTGAACTCGGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTG	3504	0.10569265336519797	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	3436	0.10364154022911537	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	4925	0.0	37.215042	32
GCGGCAC	5140	0.0	35.67027	33
CGCGATT	40	0.002526014	34.69562	36
CGGCACC	5305	0.0	34.575497	34
CTTACCC	1285	0.0	32.8155	70
AGGACCG	600	0.0	32.176323	70
GCACCCC	5790	0.0	31.639534	36
TCGCCGG	5110	0.0	31.599022	48
ACCCGCG	5855	0.0	31.431871	25
CCCGTCG	5250	0.0	31.022308	44
CCGTCGC	5235	0.0	30.922113	45
CCCCCGA	5965	0.0	30.878012	19
AGTCCGC	6070	0.0	30.609108	7
CACCCCC	6015	0.0	30.522488	37
CAGTCCG	5795	0.0	30.39302	6
CCCCGAC	6145	0.0	29.979876	20
TCCGCCC	6355	0.0	29.94285	9
GGCACCC	6335	0.0	29.126938	35
GTCCGCC	6495	0.0	28.818892	8
CCGCGCG	6450	0.0	28.43196	27