EGAF00005318208 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318208
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3379867
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	29525	0.8735550836763695	No Hit
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	15793	0.4672669072481255	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	5619	0.16624914530660526	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	4901	0.14500570584582176	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	4092	0.12106985274864365	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	4045	0.11967926548589042	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	3407	0.10080278306809114	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATCTCG	450	38.56406	36
CGCGGCA	4800	37.064857	32
TCGTATC	465	35.702007	33
GCGGCAC	5005	35.58832	33
TCGTATG	510	35.538353	40
ACGAATT	525	34.664906	27
AATTCGT	510	34.458	30
TCGCCGG	4915	34.087826	48
CGTATGC	545	33.93356	41
CCCGTCG	5080	33.50301	44
CCGTCGC	5045	33.358997	45
CGGCACC	5410	32.766705	34
CGAATTC	590	32.630295	28
TATGCCG	590	32.01046	43
GAATTCG	545	31.580803	29
ACCCGCG	5760	30.993612	25
GTTATCG	260	30.053362	6
GCACCCC	5960	29.990677	36
CCCCCGA	5925	29.965342	19
CGTATCT	555	29.9439	34