EGAF00005318209 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318209
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3379867
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	56

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	28517	0.843731424934768	No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	7432	0.2198903092932355	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	5886	0.17414886443756514	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	4587	0.13571539945210861	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCGCGGT	2985	48.257805	9
TGGCGCG	3260	44.29054	15
CGCCGTA	345	42.127975	53
TACGGCC	375	41.67596	7
CTACTCG	3700	40.371468	37
CCGAACT	495	40.289	67
CGGTATA	155	39.704308	1
GTCTACG	385	38.828537	4
TACTCGG	3845	38.8013	38
CGCGGTG	3775	38.788807	10
GCCGTAT	380	38.30026	54
CGGTAAG	305	38.113243	1
CGGCAAT	440	38.075027	1
TAGTCCC	4010	36.860065	28
TCTACGG	410	36.46094	5
GTAGTCC	4040	36.287807	27
ACTCGGG	4205	36.19026	39
AGGATCG	3900	36.176327	59
GGGGTAG	1555	35.83885	1
GATCGCT	3940	35.809994	61