EGAF00005318213 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318213
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3359274
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	56

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	28276	0.8417294927415865	No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	7162	0.2132008285123512	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	5825	0.17340056214527305	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	4500	0.13395751582038262	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCGCGGT	3285	47.291912	9
TGGCGCG	3325	46.615845	15
CTACTCG	3820	42.031414	37
CCGAACT	530	41.635654	67
TACTCGG	3890	41.228775	38
CGCGGTG	3895	40.060028	10
ACTCGGG	4210	38.710335	39
AGGATCG	3995	38.39155	59
GTAGTCC	4225	38.24581	27
GATCGCT	4025	38.015034	61
TAGTCCC	4295	37.66482	28
TGTAGTC	4355	37.30132	26
CGGGTAG	470	37.18398	1
GGGGTAG	1430	37.143192	1
CGTGCCT	4385	36.57804	20
GCCGGTT	590	36.294086	3
GGGGTAT	1535	35.9419	1
CCTGTAG	4580	35.32042	24
ATCGCTT	4345	35.093433	62
CGGTATA	215	35.06451	1