EGAF00005318216 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318216
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3437557
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	20838	0.6061863119651543	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	20501	0.5963828381609382	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	10258	0.29840959728085964	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	6252	0.18187334784557754	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	5711	0.1661354269907379	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	5633	0.16386637370667598	No Hit
GTGCGCGTGCAGGTCGCTCAGGGCGGACAGCGCGTTGGGCATGTCGTCCA	5266	0.15319018710089752	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	5132	0.14929206992058605	No Hit
GTGGCTTAGGAGCTTGAAGTTGACCGGGTCCACCCGAAGCTTGTGCGCGT	5092	0.14812845285183635	No Hit
GGGGGTACGGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGG	4400	0.1279978775624666	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	4087	0.11889257399950023	No Hit
GGGGCTGGGGGGAGGCCCAAGGGGCAAGAAGCATGGCCACCGAGGCTCCA	3668	0.10670368520434716	No Hit
TGTCCAGGGAGGCGTGCACCGCAGGGGTGAACTCGGCGGGGAGGTGGGCG	3624	0.10542370642872248	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCGTATG	285	37.850143	40
CGCGGCA	6150	37.493134	32
GCGGCAC	6285	36.605408	33
TCGCCGG	6160	35.604683	48
CGGCACC	6600	34.991146	34
CCGTCGC	6340	34.76822	45
CCCGTCG	6410	34.729023	44
ACCCGCG	7105	32.366997	25
CCCCCGA	7195	32.17348	19
GCACCCC	7385	31.651495	36
CCCCGAC	7435	31.066946	20
CACCCCC	7585	30.846676	37
CCCCCGT	7370	30.090363	42
GTTATCG	250	30.071526	6
CCGCGCG	7735	29.86711	27
GCGCGGG	7705	29.111816	62
GGCACCC	8080	28.772898	35
TATCGGA	250	28.704638	8
CGTCGCC	7750	28.513414	46
GTACGGC	590	28.381538	14