EGAF00005318219 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318219
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3436418
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	57

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	19834	0.5771707632773428	No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	10686	0.3109633344953961	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	6417	0.18673514106840322	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	4527	0.13173601116045838	No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC	3492	0.10161744002039333	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCGCGGT	3090	49.65494	9
TGGCGCG	3460	44.542545	15
CTACTCG	3675	43.085342	37
GGGGACT	3885	42.31519	1
TACTCGG	3785	41.770008	38
ACTCTTC	3860	40.723503	5
CCGAACT	540	40.714977	67
TCTGGTC	3805	40.14463	10
GGGGTAT	1260	39.85123	1
GGACTCT	4175	39.206673	3
CGGGTAG	470	38.782646	1
GTAGTCC	4075	38.526287	27
AGGATCG	3865	38.5191	59
ACTCGGG	4165	38.413895	39
CGGGACT	955	38.173492	1
GGGACTC	4040	38.14838	2
TAGTCCC	4165	37.639416	28
TGTAGTC	4195	37.484756	26
CTGGTCC	4115	36.622646	11
GATCGCT	4030	36.590218	61