EGAF00005318220 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318220
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3426714
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	21307	0.6217910219528097	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	20690	0.6037854340922528	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	10143	0.2959978568389425	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	6316	0.1843165201414533	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	5719	0.16689458180636024	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	5620	0.16400551665531468	No Hit
GTGCGCGTGCAGGTCGCTCAGGGCGGACAGCGCGTTGGGCATGTCGTCCA	5171	0.15090258480865343	No Hit
GTGGCTTAGGAGCTTGAAGTTGACCGGGTCCACCCGAAGCTTGTGCGCGT	5117	0.1493267310899013	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	4981	0.14535791431674777	No Hit
GGGGGTACGGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGG	4349	0.12691458931209315	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	4101	0.11967733519634262	No Hit
GGGGCTGGGGGGAGGCCCAAGGGGCAAGAAGCATGGCCACCGAGGCTCCA	3656	0.10669113325477411	No Hit
TGTCCAGGGAGGCGTGCACCGCAGGGGTGAACTCGGCGGGGAGGTGGGCG	3553	0.10368533819863578	No Hit
GCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCTT	3548	0.10353942581726983	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	6060	37.823128	32
GCGGCAC	6255	36.89466	33
TCGCCGG	6165	35.639194	48
CGGCACC	6595	35.135628	34
CCCGTCG	6430	34.294403	44
TCGTATG	305	34.236984	40
CCGTCGC	6470	34.01367	45
CGTATGC	350	33.850048	41
GTTATCG	230	32.693436	6
ACCCGCG	7105	32.51503	25
CCCCCGA	7195	31.888895	19
CCCGTTA	195	31.560968	3
CCCCGAC	7290	31.543509	20
GCACCCC	7440	31.426493	36
CACCCCC	7560	30.908947	37
CCGCGCG	7515	30.698105	27
CCCCCGT	7350	29.846636	42
GGCACCC	7910	29.27336	35
TATCGGA	240	28.482918	8
GCGCGGG	7825	28.236124	62