EGAF00005318232 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318232
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4029582
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	57

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	20455	0.5076208897101485	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	10591	0.2628312316265062	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	6560	0.16279604187233315	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	5813	0.1442581389335172	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	5638	0.13991525671893512	No Hit
CGTTTGAATATTTGCTACTACCACCAAGATCTGCACCTGCGGCGGCTCCACCCGGGCCCGCGCCCTAGGCTTCA	5619	0.1394437437927805	No Hit
GACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTG	5235	0.12991421939049758	No Hit
TGGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCAC	5014	0.12442977956522538	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	4937	0.12251891139080925	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	4732	0.11743153508229885	No Hit
AGGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCAC	4690	0.11638924335079916	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	4683	0.11621552806221587	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	4652	0.11544621749848992	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGGACCG	1035	36.933525	70
CGCGGCA	6600	34.432938	32
GCGGCAC	6655	34.419407	33
CCCGTCG	6445	33.476505	44
TCGCCGG	6495	33.224617	48
CCGTCGC	6560	32.812782	45
CGGCACC	7035	32.62528	34
CGTACGT	315	31.736847	19
GCACCCC	7540	30.557547	36
GTACGTA	355	30.107862	20
CACCCCC	7835	29.420977	37
TACGTAG	355	29.14316	21
CCCCCGA	8025	28.952843	19
GTGCCGT	585	28.893314	1
CGCCCTA	2445	28.648035	61
ACCCGCG	8205	28.186062	25
GGCACCC	8265	27.90713	35
GTTCCGT	330	27.177942	1
CGATCTA	360	27.131195	47
CGTTCGT	320	26.949282	1