EGAF00005318233 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318233
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4029582
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	60

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	6931	0.17200295216724712	No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	5939	0.14738501412801625	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	5581	0.13850071794047125	No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC	5376	0.13341334163196084	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	4655	0.11552066690788275	No Hit
GGGCGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGC	4508	0.11187264584763383	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGGCATA	285	46.079136	1
GCGCGGT	3700	45.347424	9
AAGTACG	1275	42.273335	63
TGGCGCG	3950	42.21462	15
TCTACGG	500	42.0325	5
AGTACGC	1285	42.002903	64
CCGAACT	705	41.151722	67
GTACGCA	1240	40.153572	65
GTTGATC	1475	39.938496	10
CGGTTCA	750	39.04658	5
GGGGTAG	1775	38.356014	1
GTCTACG	550	38.21136	4
CTACTCG	4405	37.534286	37
TACGCAC	1290	37.3044	66
TACGGCC	545	37.2976	7
CGCGGTG	4540	37.25746	10
TACTCGG	4505	37.25554	38
CGGGTAG	540	37.119305	1
TAGCATA	1595	36.778957	24
GTAGTCC	4515	36.714302	27