EGAF00005318234 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318234
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4142138
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	57

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	20925	0.505173898117349	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	10970	0.26483907585889216	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	6651	0.16056925191772944	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	5970	0.14412846698975262	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	5806	0.14016915901884486	No Hit
CGTTTGAATATTTGCTACTACCACCAAGATCTGCACCTGCGGCGGCTCCACCCGGGCCCGCGCCCTAGGCTTCA	5689	0.13734453077130698	No Hit
GACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTG	5243	0.12657714446017973	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	5098	0.12307653680297469	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	4981	0.12025190855543683	No Hit
TGGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCAC	4965	0.11986563460705559	No Hit
AGGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCAC	4878	0.11776527001273257	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	4798	0.11583390027082632	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	4671	0.11276785080555017	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	6715	0.0	35.50328	32
GCGGCAC	6810	0.0	35.17538	33
CGGCACC	7275	0.0	33.03225	34
CCCGTCG	6865	0.0	32.341885	44
CCGTCGC	6900	0.0	32.20417	45
ACGATCG	75	1.6884696E-6	32.156208	6
TCGCCGG	6995	0.0	31.999052	48
GCACCCC	7780	0.0	31.31684	36
GTGCCGT	685	0.0	31.225697	1
TATCGGA	320	0.0	31.223103	8
GTTATCG	335	0.0	29.825052	6
CACCCCC	8230	0.0	29.44894	37
CCCCCGA	8280	0.0	29.273056	19
CGTACGT	390	0.0	29.17376	19
TTATCGG	355	0.0	29.115276	7
AGGACCG	1060	0.0	28.623178	70
GGCACCC	8405	0.0	28.60308	35
ACCCGCG	8665	0.0	27.69562	25
CGCGCTA	150	3.45608E-11	27.645319	28
GTTCTCG	2870	0.0	26.530071	13