FastQCFastQC Report
Wed 8 May 2024
EGAF00005318235

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005318235
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4142138
Total Bases310.2 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC60

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT141520.3416593073432126No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTG65520.1581791818621205No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC53820.12993289938674182No Hit
GGGCGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGC50380.12162800949654501No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN49530.11957592914576966No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)