EGAF00005318236 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318236
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4085107
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	57

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	20330	0.4976613831657286	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	10670	0.2611926688823573	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	6580	0.16107289233794855	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	5779	0.14146508279954478	No Hit
CGTTTGAATATTTGCTACTACCACCAAGATCTGCACCTGCGGCGGCTCCACCCGGGCCCGCGCCCTAGGCTTCA	5511	0.13490466712377422	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	5465	0.13377862562718676	No Hit
GACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTG	5287	0.12942133461865257	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	5055	0.12374216880977659	No Hit
TGGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCAC	4895	0.1198255027346897	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	4849	0.1186994612381022	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	4709	0.11527237842240118	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	4646	0.11373019115533571	No Hit
AGGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCAC	4453	0.10900571270226213	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTACGT	275	33.856068	19
AGGACCG	960	33.65439	70
TAGTCCG	390	33.58444	6
CGCGGCA	6935	32.78311	32
GCGGCAC	6955	32.698498	33
CGGCACC	7250	31.33299	34
TCGCCGG	6765	31.165478	48
CCCGTCG	6860	30.845911	44
CCGTCGC	6855	30.737782	45
GCACCCC	7640	29.754417	36
TATCGGA	270	29.361837	8
CGCCCTA	2335	28.608025	61
CACCCCC	8025	28.426971	37
GTTCTCG	2600	28.235369	13
CCCCCGA	8150	27.62874	19
GTACGTA	350	27.591503	20
GGCACCC	8340	27.205433	35
CGATCTA	335	27.067318	47
GTCGTAC	640	26.928314	11
ACCCGCG	8390	26.91383	25