EGAF00005318239 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318239
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3717138
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	60

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	19330	0.5200237386935863	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	13524	0.3638283001599618	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	11098	0.2985630342483922	No Hit
GGGGACTCTTCTGGTCCGCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	8269	0.22245609390880833	No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTT	6910	0.18589570793443772	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	4162	0.11196786344763095	No Hit
CGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	3980	0.10707162338336644	No Hit
GGGCGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGC	3843	0.10338599212620031	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TACGGCC	865	54.22199	7
CCGAACT	1035	53.411816	67
GCGCGGT	6830	53.371914	9
TCTACGG	895	52.017757	5
GGGGACT	5400	51.334244	1
CGCGGTG	7320	49.7992	10
TGGCGCG	7355	49.51267	15
GTCTACG	960	49.21418	4
GCCGGTT	1135	48.61245	3
TCTGGTC	6105	48.58154	10
ACTCTTC	6120	48.460503	5
GGACTCT	6380	47.348564	3
TTCTGGT	6340	46.67201	9
CGGTTCA	1190	46.657326	5
GGGACTC	6330	46.524048	2
CGAACTT	1250	46.08795	68
GCGTCTA	195	45.979275	2
TGGTCCG	2035	45.925262	12
CTACGGC	1030	45.53471	6
CGGGACT	1275	45.385513	1