EGAF00005318247 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318247
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3124461
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	59

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	15120	0.48392346711960876	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	11741	0.3757768139848761	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	9147	0.292754494295176	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	8667	0.27739184454534715	No Hit
GGGGACTCTTCTGGTCCGCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	6720	0.2150770964976039	No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTT	5570	0.17827074813863894	No Hit
CGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	3285	0.1051381342253912	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CCGAACT	975	53.12458	67
GCGCGGT	5475	52.278122	9
GGGGACT	4710	50.718998	1
CGGTTCA	1005	48.890232	5
TGGCGCG	5870	48.63538	15
ACTCTTC	5215	47.965527	5
TCTGGTC	5135	47.91061	10
CGCGGTG	6125	46.842438	10
GCCGGTT	1065	46.128452	3
GGACTCT	5490	46.11875	3
CGAACTT	1160	46.04328	68
GGGACTC	5460	45.743687	2
TTCTGGT	5390	45.38897	9
TGGTCCG	1655	44.63174	12
CCGGTTC	1120	43.56347	4
TGTAGTC	6715	43.470314	26
GTAGTCC	6745	43.246025	27
CTGGTCC	5675	43.158295	11
CGGCAAT	240	43.15146	1
TAGTCCC	6790	42.978127	28