EGAF00005318254 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318254
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3604121
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	57

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	25856	0.7174009973583019	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	10363	0.28753196687902544	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	9840	0.2730208003560369	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	7977	0.22132997199594576	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	6582	0.18262427926254418	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	6490	0.1800716457632804	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	6003	0.16655933582696028	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	5790	0.16064943435583875	No Hit
TGGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCAC	4532	0.12574494585503648	No Hit
AGGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCAC	4184	0.11608933218390836	No Hit
GACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTG	4082	0.11325923852168115	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	3893	0.1080152414416719	No Hit
GGGGGCAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	3866	0.10726609900167058	No Hit
GCCCCGAGAGAACCTCCCCCGGGCCCGACGGCGCGACCCGCCCGGGGCGC	3845	0.10668343265944735	No Hit
CCTTGGTCCGTGTTACAAGACGGGTCGGGTGGGTAGCCGACGTCGCCGCC	3656	0.1014394355794381	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	7530	38.727345	32
GCGGCAC	7770	37.586803	33
TAGTCCG	490	36.740505	6
CGGCACC	8045	36.097218	34
TCGCCGG	7470	36.08894	48
CCCGTCG	7520	35.656994	44
CCGTCGC	7625	35.13503	45
CACCCCC	8405	34.94986	37
GCACCCC	8420	34.837563	36
CCCCCGA	8725	33.74352	19
GTTCCGT	375	33.347614	1
ACCCGCG	8875	33.2018	25
TTCCTCG	1000	32.902607	4
GGCACCC	9065	32.386284	35
CCCCGAC	9565	30.857294	20
CGCCCTA	1365	30.83147	61
CGCTTCC	1010	30.265984	1
GCGAGAT	1010	30.207489	26
TACGGCC	1070	29.445137	15
GTACGGC	1065	29.258282	14