EGAF00005318267 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318267
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3077514
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	62

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	34560	1.1229843308592584	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	7841	0.25478356881560893	No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	7477	0.24295584033086443	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	6255	0.20324846613207934	No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC	4708	0.15298062007191518	No Hit
GGGCGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGC	4254	0.13822845322555802	No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTT	4109	0.13351685808740432	No Hit
GGGGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCCCACCCCTCCTCCCCGCGCCCCCGCCCCGGCG	3825	0.12428863036853773	No Hit
GGGGGGAAGGCCCGGCGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGT	3274	0.10638456884355359	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCGTA	30	7.796734E-8	72.81819	60
TCTACGG	465	0.0	52.01315	5
CCGAACT	760	0.0	51.38585	67
GCGCGGT	4050	0.0	51.174854	9
TACGGCC	510	0.0	48.081627	7
TGGCGCG	4365	0.0	47.250954	15
CGTATCA	215	0.0	45.338604	56
GTAGTCC	4720	0.0	44.645103	27
CTACTCG	4760	0.0	44.432953	37
TAGTCCC	4760	0.0	44.411957	28
GTTGATC	950	0.0	43.84545	10
CGCGGTG	4745	0.0	43.750065	10
TACTCGG	4855	0.0	43.49964	38
TGTAGTC	4865	0.0	43.382996	26
CGGTTCA	845	0.0	43.331467	5
CTTAGGC	865	0.0	42.839737	18
GGGGACT	2625	0.0	42.236183	1
GCCGGTT	875	0.0	42.23111	3
CCTGTAG	5050	0.0	41.940407	24
CCGACTC	795	0.0	41.41015	3