EGAF00005318276 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318276
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3015712
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	16423	0.5445811801657452	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	6250	0.207247906961938	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	4690	0.15551882938423828	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	4223	0.14003326577604228	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	3616	0.11990534905189885	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	3100	0.10279496185312126	No Hit
TGGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCAC	3035	0.1006395836207171	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	4890	0.0	38.159706	32
GCGGCAC	5100	0.0	36.32183	33
TCGCCGG	5050	0.0	35.14605	48
CGGCACC	5380	0.0	34.4395	34
CCGTCGC	5185	0.0	34.122616	45
CCCGTCG	5305	0.0	33.603256	44
GCACCCC	5625	0.0	32.962513	36
CACCCCC	5815	0.0	32.020912	37
CCCCCGA	5900	0.0	31.786802	19
TAGTCCG	400	0.0	31.125666	6
ACCCGCG	6025	0.0	31.03255	25
CCCCGAC	6140	0.0	30.491	20
CGTACGT	195	0.0	30.165731	19
CCGCGCG	6410	0.0	29.232872	27
GGCACCC	6370	0.0	29.14734	35
TCGTTTG	1620	0.0	29.037395	17
CCCCCGT	6235	0.0	28.458464	42
CGTCGTG	125	4.727728E-6	28.175568	70
TAGCGTC	185	0.0	28.041138	11
CTCGTTT	1655	0.0	27.791716	16