EGAF00005318281 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318281
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3305530
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	60

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	13328	0.40320311720057	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	13260	0.40114595843934253	No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	11214	0.339249681594177	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	9299	0.28131646059784665	No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTT	6088	0.18417621379929996	No Hit
GGGCGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGC	4155	0.12569845077793879	No Hit
GGGGGGCCCTTCCCGTGGATCGCCCCAGCTGCGGCGGGCGTCGCGGCCGC	4113	0.12442785271953363	No Hit
GGGGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCCCACCCCTCCTCCCCGCGCCCCCGCCCCGGCG	3661	0.11075379742431624	No Hit
GGGGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG	3623	0.10960420870480679	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCGTA	30	7.245473E-6	59.78678	60
TCTACGG	855	0.0	52.141014	5
CCGAACT	1005	0.0	52.005516	67
TACGGCC	870	0.0	51.63005	7
GCGCGGT	6395	0.0	51.455738	9
TGGCGCG	6680	0.0	49.361523	15
GTCTACG	905	0.0	48.88426	4
GCCGGTT	1075	0.0	47.801632	3
CGCGGTG	6925	0.0	47.7633	10
CGGTTCA	1085	0.0	47.047417	5
CTACGGC	955	0.0	46.324875	6
GGTACGA	245	0.0	43.05959	3
GTCGTAC	190	0.0	42.986485	3
GTAGTCC	7810	0.0	42.794384	27
TCTGGTC	3020	0.0	42.70514	10
TAGTCCC	7840	0.0	42.4889	28
CTACTCG	7935	0.0	42.326603	37
TGTAGTC	7950	0.0	42.043354	26
TACTCGG	8025	0.0	41.810867	38
GGGGACT	3355	0.0	41.75277	1