Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005318287 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3596865 |
Sequences flagged as poor quality | 0 |
Sequence length | 35-76 |
%GC | 55 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC | 5463 | 0.15188226413835382 | No Hit |
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC | 4632 | 0.12877881154839008 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGCGGT | 3115 | 0.0 | 46.506565 | 9 |
TGGCGCG | 3270 | 0.0 | 44.403534 | 15 |
CGGCATA | 325 | 0.0 | 39.551804 | 1 |
CTACTCG | 3795 | 0.0 | 38.954735 | 37 |
CGGCAAA | 750 | 0.0 | 38.910423 | 1 |
CGGGTAG | 545 | 0.0 | 38.884922 | 1 |
CGCGGTG | 3835 | 0.0 | 38.31615 | 10 |
TACTCGG | 3870 | 0.0 | 38.299633 | 38 |
CCGAACT | 580 | 0.0 | 36.04027 | 67 |
CGGTATA | 175 | 0.0 | 35.734062 | 1 |
ACTCGGG | 4205 | 0.0 | 35.590538 | 39 |
GTAGTCC | 4170 | 0.0 | 35.364204 | 27 |
GGGGTAG | 1775 | 0.0 | 35.230762 | 1 |
TACGGCC | 330 | 0.0 | 34.57469 | 7 |
TAGTCCC | 4315 | 0.0 | 34.42562 | 28 |
CGGCATT | 665 | 0.0 | 33.957806 | 1 |
AGGATCG | 4230 | 0.0 | 33.901093 | 59 |
TGTAGTC | 4445 | 0.0 | 33.326504 | 26 |
GGGGGGA | 7380 | 0.0 | 33.140892 | 1 |
GATCGCT | 4395 | 0.0 | 32.75573 | 61 |