EGAF00005318295 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318295
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2617227
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	6680	0.25523196879750976	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	3689	0.1409507085170679	No Hit
GGGGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG	3383	0.12925894467694243	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	2810	0.1073655437606291	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTCTACG	840	55.25714	4
TACGGCC	835	55.17732	7
CTACGGC	890	52.539127	6
TCTACGG	890	52.15281	5
GCGCGGT	2215	46.723465	9
TGGCGCG	2230	45.79069	15
CGGTATG	295	45.664375	1
ACGGCCA	1130	41.38117	8
CGGTATT	360	41.25731	1
GAACGCG	1105	40.88377	24
CGGTACT	280	40.709045	1
CGGCATA	290	39.30528	1
GCCATAC	1190	39.28795	11
CGGCAAT	300	39.14647	1
CCGAACT	375	38.926586	67
CGGCCAT	1210	38.64522	9
CGCGGTG	2700	38.585236	10
CTACTCG	2670	38.48519	37
TACTCGG	2675	38.43853	38
ATCTCGT	1165	38.10166	35