FastQCFastQC Report
Wed 8 May 2024
EGAF00005318301

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005318301
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2576312
Total Bases192.3 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT70400.27325882889960534No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN67200.26083797304053236No Hit
GGGGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG31420.1219572784662727No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)