EGAF00005318304 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318304
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3309966
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	17461	0.5275280773276826	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	8562	0.2586733519317117	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	7163	0.2164070567492234	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	7017	0.21199613530773426	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	4508	0.1361947524536506	No Hit
CGTTTGAATATTTGCTACTACCACCAAGATCTGCACCTGCGGCGGCTCCACCCGGGCCCGCGCCCTAGGCTTCA	4110	0.12417045975698844	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	3921	0.1184604313156087	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	3705	0.11193468452546038	No Hit
GACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTG	3501	0.10577147922365365	No Hit
TGGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCAC	3472	0.10489533729349486	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	5380	0.0	37.375656	32
GCGGCAC	5295	0.0	37.013187	33
CGGCACC	5500	0.0	35.64769	34
ACGATCG	50	1.8713085E-4	34.47128	6
TCGCCGG	5490	0.0	34.062008	48
CCGTCGC	5610	0.0	33.57651	45
TAGCGTC	365	0.0	33.05615	11
GCACCCC	6050	0.0	32.94984	36
CGTACGT	295	0.0	32.73682	19
CCCGTCG	5810	0.0	32.702343	44
TCGCGTG	65	2.1997585E-5	32.100754	1
CCCCCGA	6400	0.0	31.526545	19
CACCCCC	6360	0.0	31.196394	37
GGCACCC	6400	0.0	30.592697	35
TAGTCCG	260	0.0	30.493826	6
CGATCTA	345	0.0	30.32034	47
GTTCCGT	310	0.0	30.288614	1
GATAGGC	2730	0.0	30.022299	40
ACCCGCG	6755	0.0	29.806383	25
CCCCGAC	6860	0.0	29.36802	20