FastQCFastQC Report
Thu 9 May 2024
EGAF00005318305

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005318305
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3309966
Total Bases247.9 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC58

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT161350.48746724286593884No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTG103620.3130545751829475No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGA44150.1333850559190034No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN38640.11673835924598622No Hit
GGGGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCCCACCCC35910.10849054038621544No Hit
CGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT35590.10752376308397127No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)