EGAF00005318306 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318306
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3317276
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	17377	0.523833410304117	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	8802	0.26533818711497026	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	7336	0.2211453011446741	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	7293	0.21984905687678688	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	4458	0.13438737084282407	No Hit
CGTTTGAATATTTGCTACTACCACCAAGATCTGCACCTGCGGCGGCTCCACCCGGGCCCGCGCCCTAGGCTTCA	4197	0.12651946958890367	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	3910	0.11786779273114448	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	3780	0.11394891471195041	No Hit
GACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTG	3599	0.10849263070061099	No Hit
TGGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCAC	3456	0.10418186487949752	No Hit
GGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTT	3331	0.10041371293796476	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	5655	36.78414	32
GCGGCAC	5600	35.923992	33
TCGCCGG	5845	34.24756	48
CGGCACC	5890	34.227005	34
AGGACCG	840	34.208908	70
CCGTCGC	5955	33.78419	45
CCCGTCG	6025	33.55272	44
GCACCCC	6445	31.35808	36
CCCCCGA	6845	30.578627	19
CACCCCC	6665	30.335438	37
GTTCCGT	275	30.190731	1
CGCCCTA	1615	29.756098	61
CCCCCGT	6750	29.658642	42
CCCCGAC	7210	29.034994	20
GGCACCC	6980	28.942257	35
ACCCGCG	7170	28.94115	25
CGATCTA	265	28.933477	47
AGTCCGC	7485	28.548698	7
CAGTCCG	7235	28.296604	6
GTACGGC	665	27.98714	14