FastQCFastQC Report
Thu 9 May 2024
EGAF00005318307

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005318307
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3317276
Total Bases248.4 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC58

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT162150.4888046698556285No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTG104870.3161328752868317No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGA44760.13492998472240475No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN38690.11663183889432172No Hit
CGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT35660.10749783858804633No Hit
GGGGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCCCACCCC34920.10526709263865895No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)