EGAF00005318308 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318308
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3325021
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	17453	0.5248989404878946	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	8675	0.26090060784578506	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	7499	0.22553241017124406	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	7285	0.21909636059441429	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	4690	0.14105174072584803	No Hit
CGTTTGAATATTTGCTACTACCACCAAGATCTGCACCTGCGGCGGCTCCACCCGGGCCCGCGCCCTAGGCTTCA	4232	0.1272773916315115	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	3944	0.11861579220101166	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	3850	0.11578874238689019	No Hit
GACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTG	3499	0.1052324180809685	No Hit
TGGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCAC	3468	0.10430009314226889	No Hit
GGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTT	3375	0.10150311832616997	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	5415	37.308655	32
GCGGCAC	5310	36.166946	33
CCGTCGC	5460	35.5927	45
CGGCACC	5465	35.219395	34
TCGCCGG	5560	34.8415	48
CCCGTCG	5705	34.160286	44
GCACCCC	6130	31.710312	36
CACCCCC	6210	31.20769	37
CCCCCGA	6505	31.161953	19
CGCCCTA	1575	30.52217	61
GTTCTCG	2095	30.09812	13
CCCCGAC	6770	29.996708	20
ACCCGCG	6855	29.705484	25
TTATCGG	350	29.535112	7
CCCCCGT	6575	29.442038	42
GGCACCC	6600	29.434774	35
CTCGTTT	2160	29.19239	16
TCGTTTG	2175	29.153873	17
CGTACGT	300	28.72853	19
CAGTCCG	6970	28.376871	6