EGAF00005318310 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318310
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3239850
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	18249	0.5632668179082365	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	9826	0.3032856459403985	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	6138	0.18945321542664012	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	6065	0.1872000246925012	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	5305	0.16374214855626032	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	4737	0.14621047270706977	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	4235	0.13071592820655276	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	3927	0.12120931524607621	No Hit
GTGGCTTAGGAGCTTGAAGTTGACCGGGTCCACCCGAAGCTTGTGCGCGT	3245	0.10015895797644953	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	5490	0.0	35.836044	32
GCGGCAC	5630	0.0	34.836536	33
CGGCACC	5890	0.0	33.196106	34
TCGCCGG	5645	0.0	32.444565	48
CCGTCGC	5745	0.0	32.05813	45
CCCGTCG	5790	0.0	31.845222	44
CCCCCGA	6370	0.0	31.031218	19
ACCCGCG	6410	0.0	30.695934	25
CGCGATT	45	0.004694462	30.571888	3
GTTCCGT	320	0.0	30.194681	1
GCACCCC	6525	0.0	30.046316	36
CCCCGAC	6670	0.0	29.54049	20
CACCCCC	6760	0.0	29.169916	37
AGTCCGC	6885	0.0	29.123672	7
CAGTCCG	6595	0.0	28.683317	6
CCGCGCG	6935	0.0	28.4458	27
GGCACCC	6920	0.0	28.370308	35
TCCGCCC	7270	0.0	28.052713	9
GTCCGCC	7190	0.0	28.031752	8
CGTCGCC	6705	0.0	27.38689	46